#include <iostream>
#include <string>
#include <stdlib.h>

using namespace std;

#include "linked_stgRNA.h"

linked_stgRNA::linked_stgRNA(){
        
		count = 0;
		kmer = "";
		child = NULL;
		self = 0;
}

void linked_stgRNA::set_count(int x){
	count = x;
}

const int linked_stgRNA::get_count(){
	return count;
}

void linked_stgRNA::set_kmer(const string stgRNA){
	kmer = stgRNA;
}

void linked_stgRNA::set_self(bool self_value){
	self = self_value;
}

const string linked_stgRNA::get_kmer(){
	return kmer;
}

linked_stgRNA* linked_stgRNA::set_child_pointer(const string stgRNA, int hit_count){
	child = new linked_stgRNA; 
	child->set_kmer(stgRNA);
	child->set_count(hit_count);

	int len = stgRNA.length();

		if (!stgRNA.compare(len-7, 7, "MMMMMMM"))
                	child->set_self(1);
        	else
                	child->set_self(0);

return child; 
}

linked_stgRNA* linked_stgRNA::get_child_pointer(){
	if (child)
		return child;
	else
		return NULL;
}

bool linked_stgRNA::is_self(){

	return self;
}